Jonathan Karr

Biography
Systems biologist focused on developing comprehensive computational models to enable personalized and predictive medicine and rational bioengineering. Focused on innovative research and engineering. Experienced in molecular cell biology, computational modeling, software engineering, and scientific visualization. Committed to teaching and mentorship.
Keywords
Keywords are a limited number of terms which represent the primary research focus of the researcher. They can include topics, methodologies, model systems etc.
Secondary Keywords
Secondary keywords form a more comprehensive list including all terms that have been directly related to the research of this scientist - they may represent collaborations rather than the primary research focus.

Papers
To get the community network started, we have populated the database with almost 2000 papers from PubMed which had clear connections to both systems biology and European institutes. Due to the automated nature of this search many relevant papers may be missing. Registered researchers can correct these mistakes by adding more of their own papers to their profiles, or removing the non-relevant ones.

Causal inference in biology networks with integrated belief propagation.
Chang R et al.
2015
Pac Symp Biocomput
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions.
Karr JR et al.
2014
Database (Oxford)
Accelerated discovery via a whole-cell model.
Sanghvi JC et al.
2013
Nat Methods
WholeCellViz: data visualization for whole-cell models.
Lee R et al.
2013
BMC Bioinformatics
Towards a whole-cell modeling approach for synthetic biology.
Purcell O et al.
2013
Chaos
WholeCellKB: model organism databases for comprehensive whole-cell models.
Karr JR et al.
2013
Nucleic Acids Res
A whole-cell computational model predicts phenotype from genotype.
Karr JR et al.
2012
Cell
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli.
Covert MW et al.
2008
Bioinformatics

Organizer of

4 Sep 7 Sep 2017
Courses@CRG : Whole Cell Modelling Whole-cell models are promising tools for predicting phenotype ...
3 Apr 8 Apr 2016
Whole-cell models are promising tools for predicting phenotype from genotype by accounting for ...

Speaker at

4 Sep 7 Sep 2017
Courses@CRG : Whole Cell Modelling Whole-cell models are promising tools for predicting phenotype ...
21 Sep 27 Sep 2014
Lake Como School of Advanced Studies- Systems Biology and Systems Medicine: Precision Biotechnology ...